species:   Opsin
pid:       PID1930
parent:    n_os_milR_14
paralog:   
locus:     JAAVMX010000002.1:1309641-1309766
matures:   ['UGGCGCUAAGACCUAUGGG', 'CACAUGUCUUAGCGCCACC']
srr:       SRR12952899
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952899.cram JAAVMX010000002.1:1309641-1309766

0 out of bounds
5 alignments
2 proper strand
2 stranded perfect matches

    **************************                                                                  **************************    
GGUGGGGGCCCCACAUGUCUUAGCGCCACCAAAUUUGUAUUGGGCCAGUACCUGCCUGCACCCGCCCUAGCCAUUGUCCACGACAAGUACAAAUUUAGUGGCGCUAAGACCUAUGGGGCCCCUACU
(((((((((((((...(((((((((((((.((((((((((((((((((.......))).....)))).......((((...))))))))))))))).)))))))))))))...)))))))))))))
--------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGG--------- l=19 a=0 c
-----------CACAUGUCUUAGCGCCACC------------------------------------------------------------------------------------------------ l=19 a=0 c*
--------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGCCCC---- l=24 a=1 ma
------GGCCCCACAUGUCUUAGCGCCACC------------------------------------------------------------------------------------------------ l=24 a=0 ma*

--------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGC------- l=21 a=1 
--------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGCCCC---- l=24 a=1 (ma)

mb-01011
ax-1011011
ku-01
ss-100110011100
fn-001
